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Compare MCP servers

Compare scores, permissions, risks, and fit in one decision-focused table.

DimensionIWETurn a folder of Markdown notes into a queryable knowledge graph for you and your AI agentsFilesystem MCP ServerSecure local file read/write accessVault Cortex MCP ServerStandalone MCP server for Obsidian vaults: hybrid search, notes & files, structured memory, tasks, OAuth 2.1.
FMRS56 / 100 · C84 / 100 · B79 / 100 · B
Reliability8 / 2017 / 2012 / 20
Security and permissions11 / 2016 / 2018 / 20
Maintenance13 / 2016 / 2015 / 20
Documentation13 / 2017 / 2019 / 20
Setup experience11 / 2018 / 2015 / 20
Best for
  • Individuals whose knowledge lives in plain markdown files and who value local-first, git-versioned notes.
  • AI agent users who want their note graph as agent memory and want retrieval by structure rather than similarity guessing.
  • Developers and writers who use both an editor LSP workflow and the command line over the same notes.
  • Teams that need agent writes to declare their blast radius and to pass schema and graph-hygiene checks.
  • Local assistants that need to work inside explicitly approved directories
  • Individuals and development teams that want path-based data boundaries
  • Serious Obsidian users who want AI agents reading and writing their vault
  • Users wanting self-hosted, plugin-free operation with no external APIs
  • Mobile/multi-device workflows accessing the vault remotely
  • Security-conscious users (OAuth 2.1, atomic writes, container hardening)
Not for
  • People who want a cloud-hosted notes or memory service with no local file directory.
  • Users expecting the server to include its own AI model or inference — IWE has no built-in AI and must be paired with an external agent.
  • Scenarios that only need generic vector search and do not care about note hierarchy or link structure.
  • Builders who need a stable library-level API — the liwe crate is published but not yet API-stable.
  • Highly sensitive environments that cannot allow model access to local file contents
  • Shared remote file-service use cases
  • Users unwilling to run Docker or self-host a server
  • Non-Obsidian note tools (Notion, Logseq, etc.)
  • Scenarios requiring only a stdio local process without an HTTP server
  • Remote multi-device sync without an Obsidian Sync subscription (the remote image requires one)
Required permissions
  • Read markdown note files under the working directory the server is started in.
  • Write and modify note files in that directory, including creating, renaming, deleting, refactoring, and targeted block updates.
  • Watch the notes directory for file changes so editor edits are reflected immediately.
  • Communicate over stdio with MCP clients; running via npx requires network access to fetch the @iwe-org/mcp package.
  • Read access to every local directory listed in the configuration
  • Filesystem write access when write or move tools are enabled
  • Read/write access to the Obsidian vault folder (bind mount /vault, rw)
  • Persistent /data volume (search index, OAuth token DB, logs)
  • MCP_AUTH_TOKEN as Bearer token (also the JWT signing key)
  • Obsidian Sync token for headless sync in remote mode
  • Local download of embedding/reranker models (~45MB total), no external API calls
Risks and side effects
  • The agent holds write access to the notes directory; MCP writes must declare expect guards and validate before writing, but permitted changes still land on disk.
  • Pointing the MCP server at the wrong working directory lets the agent read and write markdown files in an unintended folder.
  • Using npx fetches an npm package from the network on first run, adding a dependency on the network and the upstream package.
  • Validation covers schemas, frontmatter, and graph-hygiene warnings, but dangling links, orphan pages, and near-duplicates are surfaced as warnings and still need human judgement.
  • The liwe crate in the repository is published but not yet API-stable, so projects building on it should pin versions.
  • Sensitive files inside an allowed directory may enter model context
  • Write and move tools change real files; keep scopes narrow and maintain backups
  • The server can read and write personal notes — guard MCP_AUTH_TOKEN carefully; leaking it exposes the whole vault
  • Writes to real note files; despite atomic writes and protected paths, misconfiguration can alter data
  • OAuth token DB lives on the /data volume; container compromise could expose valid sessions
  • Remote deployments expose a public port — set PUBLIC_URL and reverse proxy correctly
  • The remote image bundles proprietary obsidian-headless (not MIT-licensed); requires an active Obsidian Sync subscription
Supported clientsClaude Code, Claude Desktop, Cursor, WindsurfClaude Desktop, Cursor, Cline, WindsurfClaude Code, Claude Desktop, claude.ai, Cursor, OpenCode, MCP Inspector
Tools5630