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Compare scores, permissions, risks, and fit in one decision-focused table.

DimensionJoplin MCP ServerManage Joplin notes through MCP.CompartmentEncrypted, fully offline long-term memory for AI agents
FMRS55 / 100 · C75 / 100 · B
Reliability9 / 2012 / 20
Security and permissions11 / 2016 / 20
Maintenance8 / 2014 / 20
Documentation14 / 2018 / 20
Setup experience13 / 2015 / 20
Best for
  • Users who want to manage a personal Joplin knowledge base through AI.
  • MCP client users who need note, notebook, and tag search and organization.
  • Users who need to restrict AI access by notebook path.
  • Individuals or teams who prioritise privacy and offline operation and do not want data leaving the machine
  • Users who share memory across multiple MCP clients such as Claude Code, Claude Desktop, Hermes Agent, OpenClaw, Cursor, Codex and Gemini CLI
  • Scenarios that need encrypted storage, a hash-chained audit log and verifiable vault migration
  • Users who want low-latency recall, a bundled embedding model and no extra LLM calls inside the memory layer
Not for
  • Users who do not use Joplin or cannot enable Web Clipper.
  • Users who cannot provide a Joplin API authorization token.
  • Read-only scenarios where write, update, or import permissions are not desired.
  • Users who need cloud multi-device sync or a hosted team memory service; moving between machines means locking the vault and copying the file
  • Users who expect the server itself to run an LLM that extracts facts and decides what to remember; Compartment explicitly keeps no LLM inside and leaves that to the host model
  • Users who cannot keep a passphrase safe or who need a recovery path if it is lost, since Compartment never generates a password, seed or recovery phrase
  • Deployments that require network transports such as SSE or streamable-http; this server is stdio only and opens no ports
Required permissions
  • Requires a running Joplin Web Clipper authorization token supplied through JOPLIN_TOKEN.
  • Read permissions cover searching, viewing notebooks and tags, and connectivity checks.
  • Write, update, delete, and import operations can be controlled individually through configuration or environment variables.
  • Delete operations, retrieving all notes, and file imports are disabled by default.
  • notebook_allowlist can restrict read and write access by notebook path.
  • Read and write the vault file under the user's home directory, by default ~/.compartment/memory.vault, and its sibling settings file
  • Access the session directory holding the unlock credential (configurable with COMPARTMENT_SESSION_DIR), which also carries the shared embedding process's Unix socket
  • Optionally use the macOS keychain (compartment unlock --keychain is an explicit opt-in, and it survives reboots)
  • Write or merge an mcpServers entry into each MCP client's own configuration file, taking a byte-exact backup first
  • Install a PostToolUse hook for Claude Code that captures memory files the agent writes
  • Serve a read-only dashboard on 127.0.0.1 behind a one-time random URL token
Risks and side effects
  • After enabling delete, update, or import tools, an AI assistant can modify or delete Joplin content; delete operations are disabled by default.
  • Without a notebook allowlist, all notebooks are accessible by default.
  • Search results and individual notes can expose content; content_exposure settings control previews and full bodies.
  • When exposing HTTP or SSE publicly, operators must configure a reverse proxy and TLS; the documentation recommends a reverse proxy for public exposure.
  • The token is a secret credential and should not be exposed or placed in untrusted configuration.
  • A leaked passphrase means the encrypted content can be decrypted; Compartment generates no recovery phrase and cannot recover a lost passphrase
  • Enabling the memory_unlock tool places the passphrase in the model's context, which is why it is off by default
  • If a 2FA keyfile is lost, for example a USB stick, the vault cannot be opened even with the passphrase
  • `export --plaintext` writes the vault as unencrypted JSONL, so that file must be handled carefully
  • Memory content can come from untrusted sources; recall wraps memories with a notice that they are stored data and content can be marked quarantined, but the host agent must still treat memory as data to limit prompt-injection risk
  • The capture hook and client integration write into the user's own settings files, although the implementation backs up and merges rather than replacing
Supported clientsClaude Desktop, Jan AI, OllMCPClaude Desktop, Claude Code, Hermes Agent, OpenClaw, Cursor, VS Code, Codex, Gemini CLI, Cline, Roo Code, Zed, OpenCode, LM Studio, AnythingLLM, BoltAI, Goose, Kiro
Tools2614