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Compare scores, permissions, risks, and fit in one decision-focused table.

DimensionMCP AtlassianModel Context Protocol server for Confluence and JiraNotion MCP ServerOfficial Notion MCP server for querying, editing, and managing Notion pages and databases via AI agents.
FMRS56 / 100 · C64 / 100 · C
Reliability7 / 208 / 20
Security and permissions9 / 2017 / 20
Maintenance14 / 2010 / 20
Documentation14 / 2016 / 20
Setup experience12 / 2013 / 20
Best for
  • Teams that want an AI assistant to read and write Jira issues and Confluence pages directly
  • Organizations running both Atlassian Cloud and Server/Data Center environments
  • Developers who want JQL/CQL search, issue creation, and status transitions inside their IDE or chat client
  • Teams and individuals who already manage docs/wikis in Notion and want AI clients (Claude Desktop, Cursor, etc.) to operate on that content directly
  • Developers who want to self-host a local MCP server rather than use a remote hosted option
  • Automation/agent workflows that need to query or update Notion database records programmatically
Not for
  • Users without an Atlassian Jira or Confluence account/instance
  • Scenarios requiring official Atlassian support guarantees (this is not an official Atlassian product)
  • Environments that cannot securely store or rotate API tokens/.env files
  • Users who want the standard-OAuth, zero-JSON-config install with active official support — Notion recommends its newer remote Notion MCP server for that
  • Users uncomfortable handing a Notion integration token to a locally-run LLM client
  • Use cases needing capabilities the integration deliberately excludes, such as deleting databases
  • Long-term production deployments that need guaranteed maintenance, given this repo may be sunset
Required permissions
  • URL(s) of the Jira and/or Confluence instance
  • Atlassian account email + API token (Cloud), or a Personal Access Token (Server/Data Center)
  • Whatever read/write permissions that account actually holds in Jira/Confluence (creating/updating issues, creating/updating pages, and adding comments require write access)
  • A Notion internal integration token (NOTION_TOKEN or the Authorization value in OPENAPI_MCP_HEADERS), scoped by that integration's Capabilities (can be limited to read-only)
  • Access limited to the specific pages/databases explicitly connected to the integration, not the whole workspace
  • A separate bearer auth token when using the Streamable HTTP transport (--auth-token / AUTH_TOKEN)
  • Network access to the Notion API
Risks and side effects
  • A leaked API token or PAT can be used to read and write Jira/Confluence data as that account
  • The README explicitly warns to keep .env files secure to avoid credential exposure
  • Creating, updating, and transitioning issues, and creating/updating pages, are write operations — misconfigured automation could cause unintended data changes
  • Not officially maintained by Atlassian, so updates and security response depend on the community repository maintainers
  • If the integration is granted broad read/write capabilities and connected to many pages, that content is effectively exposed to the LLM, risking data leakage or unintended edits
  • Running with --unsafe-disable-auth removes bearer authentication on the HTTP transport, potentially making it reachable via DNS rebinding from pages a user visits — the README says to only use it on an isolated network
  • Multi-tenant token passthrough requires careful TLS/gateway configuration; misconfiguration risks leaking or misrouting Notion tokens between tenants
  • The README states this local server may be sunset in favor of the remote Notion MCP, and that issues/PRs here are not actively monitored, so long-term maintenance and security fixes are not guaranteed
  • Storing NOTION_TOKEN or OPENAPI_MCP_HEADERS directly in shared client config files risks leaking the secret
Supported clientsClaude Desktop, Cursor, Autohand CodeClaude Desktop, Cursor, Zed, GitHub Copilot CLI
Tools109